PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01363_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 239aa MW: 27108.1 Da PI: 9.6101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01363_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.8e-13	69	119	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ s ++ Lr+llP ++K s ++ +Av+YIk+L+ Cotton_A_01363_BGI-A2_v1.0 69 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDQMNEAVNYIKHLE 119 67***********************77...******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.246	66	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.91E-11	66	123	No hit	No description
SuperFamily	SSF47459	3.93E-14	67	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-10	69	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-11	70	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-6	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MFPLHQSDDL VYQIFSHTKQ HKIPQDPITG HTVVVESNPI ISNPTVKNRG RKICHMEGGA 60 GSDKYKKQKL HREIERQRRQ DMASLYASLR SLLPGEYIKG KRSMSDQMNE AVNYIKHLEK 120 KVKDLDAKRH ELKRVSDLAS VGSRTKPAAA SISNHCFIIR PCLIGIEIMF RCGVEDQDLS 180 LSRVLAVLVD EGLRVVSCFS TKSEEFLFHT IQTEVNDPTS VNISRLQQKL PQSSEVTKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636424.1	1e-179	PREDICTED: transcription factor bHLH118
Swissprot	Q9FLI1	3e-38	BH036_ARATH; Transcription factor bHLH36
TrEMBL	A0A2P5WTS1	1e-176	A0A2P5WTS1_GOSBA; Uncharacterized protein
STRING	Gorai.008G282400.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-40	bHLH family protein