PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01405_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 251aa    MW: 28836.7 Da    PI: 4.444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01405_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24e-1374117451
                         AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 
                                 kGVr ++ +g+++AeIrd +     + kr +lg+f+t++eAa  + + ++
  Cotton_A_01405_BGI-A2_v1.0  74 KGVRKRP-WGKFAAEIRDpF-----TkKRLWLGTFDTEKEAAVVYNKKKR 117
                                 8******.**********66.....34**********9999988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.97772129IPR001471AP2/ERF domain
PRINTSPR003673.6E-77384IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1473119IPR016177DNA-binding domain
CDDcd000189.33E-2074113No hitNo description
SMARTSM003801.7E-1274129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-1974120IPR001471AP2/ERF domain
PfamPF008475.5E-774109IPR001471AP2/ERF domain
PRINTSPR003673.6E-795111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPAFEPKNQC LNSENSKISK KFRIKYTDPN ATDSSSEEEE ENQIVGIKRI VKEISWSTVV  60
LDNDFTSSSS MAAKGVRKRP WGKFAAEIRD PFTKKRLWLG TFDTEKEAAV VYNKKKREFQ  120
IMAAVAEDEL YCRRSPSSVL DVCVGKVEDE TDMKRHVVKK VVKESKIIEP CKRTIEEDEV  180
YVNAVWDDVG SVTELSWEPP PPLWDEELLG PCCLQDTVDY ELTLPENLPE IEIDFVQDMA  240
WVDELFNVES K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636044.10.0PREDICTED: ethylene-responsive transcription factor ERF117-like
TrEMBLA0A2P5WWD21e-178A0A2P5WWD2_GOSBA; Uncharacterized protein
STRINGGorai.008G286700.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2072045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-21ERF family protein