PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01437_BGI-A2_v1.0
Common NameF383_08603
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 364aa    MW: 41774.2 Da    PI: 6.7958
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01437_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.67.7e-2269128357
                                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                 +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Cotton_A_01437_BGI-A2_v1.0  69 SRWNPTPEQLRTLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 128
                                 7*****************99**************************************97 PP
2Wus_type_Homeobox115.82.1e-3768130365
           Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Cotton_A_01437_BGI-A2_v1.0  68 SSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 130
                                 79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.7E-566133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-969128IPR009057Homeodomain-like
PfamPF000461.7E-1969128IPR001356Homeobox domain
SuperFamilySSF466894.28E-1269134IPR009057Homeodomain-like
CDDcd000863.06E-670130No hitNo description
PROSITE profilePS5007111.01374129IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MWMMGYNDGG AEFNMPDSFN GRKLRPLIPR PNNNSPCLSR INGSDFFALS MGDQNKREFN  60
TQPAVVVSSR WNPTPEQLRT LEELYRRGTR TPSADQIQHI TAQLRRYGKI EGKNVFYWFQ  120
NHKARERQKR RRQMESTQDD HPDNFERKDS ETNRTGYEVE QTKNWALPIN CSTLAEESVS  180
IQMAAKAAVS ECRADGWIQF EEGELQQRKN FVERNDTWQH KMQFSYSSLS PVLSPNPTST  240
TAAISTVTTV APPPPIRPMD PKHQYQHQQL FKTHHGLNNI FKSPCRYNNN NTNVFDFNFV  300
RNQEATLGED DSQTLQLFPL HSGNDDGSDD SNEKENEISI ATAPGNANLG GPNYQFFEFL  360
PLKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637018.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
RefseqXP_017637024.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
TrEMBLA0A0B0P6I00.0A0A0B0P6I0_GOSAR; WUSCHEL-related homeobox 1-like protein
STRINGGorai.008G289800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-62WUSCHEL related homeobox 1