PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01472_BGI-A2_v1.0
Common NameF383_00820
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 470aa    MW: 52229.4 Da    PI: 7.4628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01472_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-1659103147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 r +WT+eE++++++a +++G g W+ I +++g ++t+ q++s+ qk+
  Cotton_A_01472_BGI-A2_v1.0  59 REKWTEEEHQKFLEALRLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103
                                 789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-1653108IPR009057Homeodomain-like
PROSITE profilePS5129421.55154108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-956105IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-1657106IPR006447Myb domain, plants
SMARTSM007174.5E-1358106IPR001005SANT/Myb domain
PfamPF002491.0E-1459102IPR001005SANT/Myb domain
CDDcd001673.79E-1161104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MATEDQIEST ASPTALKSGL CCSIGSGQSE TLTQLQELYG FKHDHTPKVR KPYTITKQRE  60
KWTEEEHQKF LEALRLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVARE SNDGFESSVK  120
SIEIPPPRPK RKPTHPYPRK SVTAVKGISP LSQLERSLSP NHSVSEQDNK SPSSVLSPFV  180
FDAMGSSASE QPNRCSSPTS CTTNIQSLNN TSPVEKENDY VTSIEKENES LSSVKVFGQS  240
SEEDILSLKS NADFEEPVCT KGNEAAVVVP FTSIKLFGKT VEVKDSSKPS TGAENFQMQT  300
LKNGVAGECL DLHLSHGTVI DNCSRVPSKA NLSPCMEIHT DKNDHVEYTS DAPLPWLAFY  360
QGLPFYYITS FNQTHKDPRV KETPKEKETL NERSCTGSNT GSVSQIENME KNSDSVDSQC  420
QNPCPRGKMT SQKFSKGFVP YKRCLTERDM SSSMVVSEGR ERAQKARVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634366.10.0PREDICTED: protein REVEILLE 7-like
TrEMBLA0A1U8J8Q80.0A0A1U8J8Q8_GOSHI; protein REVEILLE 7-like
STRINGGorai.008G293600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-54MYB_related family protein