PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01505_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 226aa MW: 26288.7 Da PI: 7.2986

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01505_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.5	1.2e-44	11	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyW 83 pGfrFhPt+eelv++yLk+ + gk+l + ++i ++iy++ PwdLp ++k +e+ewyfF++rd++ + gk++nr+t++gyW Cotton_A_01505_BGI-A2_v1.0 11 LPGFRFHPTEEELVNYYLKETALGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRGGHgGKKPNRTTERGYW 92 59**********************999.99***********888999*******9998758899***** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d+++ + + +gl+ktLvfy+g+ap+g++tdWvm+eyrl Cotton_A_01505_BGI-A2_v1.0 93 KATGSDRQIRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139 *****9874455569************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.609	10	157	IPR003441	NAC domain
SuperFamily	SSF101941	7.85E-52	11	157	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEAIISPEIR LPGFRFHPTE EELVNYYLKE TALGKNLYCD IIGFLNIYNH YPWDLPGMAK 60 IGEREWYFFV QRDTRGGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY 120 TGKAPNGNRT DWVMNEYRLS DTSILREDIV LCKIYRKATS LRVLEQRAEE HALSSYVAQN 180 NNITMPLPLQ HHDYGTDMVE ADSDEHGPSS YSAWTTMTEC FTHYGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-41	12	157	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847252	0.0	KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645331.1	1e-172	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	6e-77	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8KQZ1	1e-170	A0A1U8KQZ1_GOSHI; NAC domain-containing protein 2-like
STRING	Gorai.003G003900.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-82	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]