PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01558_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 245aa MW: 27707.2 Da PI: 9.2742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01558_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.2e-07	10	59	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+ + f eL l ++ +K++Ka++L +++ +k+L Cotton_A_01558_BGI-A2_v1.0 10 RKVQKADREKLRRDRLTEQFLELGNTLDPD----RPKNEKATVLVGTIQMLKDL 59 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.344	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-5	10	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.44E-4	10	63	No hit	No description
SuperFamily	SSF47459	4.06E-10	10	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	10	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.007	15	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEAEDPIAAR KVQKADREKL RRDRLTEQFL ELGNTLDPDR PKNEKATVLV GTIQMLKDLT 60 AEVNRLKAER SSLAEESREL TQENNELREE KASVKANIEN LTVQYQQRRM MVFPWTGIDF 120 SSVMAPPYPY PVPLPVTTGP IIMHPSLQPY PFFGNHNPGA INNPCSTFMP YSTTTSNPLI 180 EQPSSQYTSS YHTSGKRDSK SKSADHQRGS NRESNGSNNV RTKVELKNPG SSTNEVRFII 240 PQRML

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016724784.1	1e-158	PREDICTED: transcription factor bHLH121-like
TrEMBL	A0A1U8MGV5	1e-157	A0A1U8MGV5_GOSHI; transcription factor bHLH121-like
STRING	Gorai.003G009400.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-56	bHLH family protein