PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01632_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23716.9 Da    PI: 7.4128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01632_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1947101357
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                 k++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Cotton_A_01632_BGI-A2_v1.0  47 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 101
                                 45699************************************************95 PP
2HD-ZIP_I/II117.76.3e-3847138293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 kkr+ls+eqv lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ e++rLe+ev
  Cotton_A_01632_BGI-A2_v1.0  47 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTIHEGVVLEKCRLESEV 129
                                 9********************************************************************************** PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                  +L+++l+e
  Cotton_A_01632_BGI-A2_v1.0 130 LKLKDQLRE 138
                                 ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.82742102IPR001356Homeobox domain
SMARTSM003891.8E-1745106IPR001356Homeobox domain
PfamPF000461.0E-1647101IPR001356Homeobox domain
SuperFamilySSF466892.31E-1747109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2049109IPR009057Homeodomain-like
CDDcd000863.83E-1549103No hitNo description
PRINTSPR000311.3E-57382IPR000047Helix-turn-helix motif
PROSITE patternPS00027077100IPR017970Homeobox, conserved site
PRINTSPR000311.3E-58298IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MALITQMYPC IYTQVAPQQG EISKPRRRRK KNKGGESGAA TAAETAKKRK LSQEQVDLLE  60
LNFGNEHKLE SERKDRLASE LGLDPRQVAV WFQNRRARWK NKKLEEEYSK LKTIHEGVVL  120
EKCRLESEVL KLKDQLREAE KEIQGLTERV DGVSSNSPSS SSVLSMEAMD PPPFLGEFGV  180
QGFEDQDVFY IGQNSYINGM EWMNLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12849RKKNKGGESGAATAAETAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641142.11e-153PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-76ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2QEE41e-150A0A0D2QEE4_GOSRA; Uncharacterized protein
STRINGGorai.003G016600.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-67homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]