PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01671_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 116aa    MW: 13235.2 Da    PI: 9.6611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01671_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19.1e-1527112797
                                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH.HT--TT-EEEEEE-SSS CS
                          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka.ngLkegDfvvFkldgrs 88 
                                   d+  +g l +p+kf+++hg+   ++    l+ +sg++W+ +l  +k++g++ +++GW eF++    L+ g  +vF++d++s
  Cotton_A_01671_BGI-A2_v1.0  27 LLDTILNGKLGIPRKFVKNHGNGMSSP--ALLQVPSGEVWKAEL--TKSDGKICFENGWLEFANHyYSLELGHLLVFRYDRNS 105
                                 467888999***********7665455..9999***********..*****************98359************999 PP

                                 EE..EEEEE CS
                          B3  89 efelvvkvf 97 
                                 +f  +v +f
  Cotton_A_01671_BGI-A2_v1.0 106 NF--HVIIF 112
                                 99..88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-2117114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2218114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-1820112No hitNo description
PROSITE profilePS5086310.33421115IPR003340B3 DNA binding domain
SMARTSM010191.5E-1522115IPR003340B3 DNA binding domain
PfamPF023623.9E-1227112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MATSSHQQGN GHLKYISNSP YFFKIILLDT ILNGKLGIPR KFVKNHGNGM SSPALLQVPS  60
GEVWKAELTK SDGKICFENG WLEFANHYYS LELGHLLVFR YDRNSNFHVI IFYRSA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5871791e-64JX587179.1 Gossypium hirsutum clone NBRI_GE21198 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472263.12e-61PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_016690612.17e-62PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_017644895.13e-60PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2QM035e-61A0A0D2QM03_GOSRA; Uncharacterized protein
STRINGGorai.003G020800.18e-62(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-23B3 family protein