PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01672_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 418aa    MW: 46935.1 Da    PI: 10.5189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01672_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604e-1916101192
                                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                 ffk+l    ++ ++ l++p  f+++  +g+   +++ltl++ sg+sW+v++  +  +g+y++ +GW++Fvk ++L+ gDf+vF
  Cotton_A_01672_BGI-A2_v1.0  16 FFKIL--IGNFDKK-LRIPPAFVKHVfKGN--VPTMLTLYSDSGNSWRVRI--KVEQGSYFFNNGWSKFVKYHDLEIGDFLVF 91 
                                 56666..5556665.9*******6668444..4668***************..999999************************ PP

                                 EE-SSSEE.. CS
                          B3  83 kldgrsefel 92 
                                  l+++s+f  
  Cotton_A_01672_BGI-A2_v1.0  92 FLVDSSTFDV 101
                                 *998788744 PP
2B336.21.1e-111822581898
                                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                          B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                 +p  f+ee g+ k +  +++++ ++g  W +    + +s++++l+ GW++F ++n++  gD+++F+++ +++   +v+v++
  Cotton_A_01672_BGI-A2_v1.0 182 IPICFTEEAGLGKVS--MVMIRGPKGGMWPMMT--TFSSKQVLLSVGWSKFLHENEIVIGDTLLFEHVPNTGHLIHVQVVN 258
                                 888899999888766..7999************..999999*************************998766667777765 PP
3B3536.4e-173204011599
                                 -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                          B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                  +++p +fa+e ++ +e     +++d++gr+We+++ ++ ks  + l++GW++Fv++n+L++gD++ F+++ +++   ++k++
  Cotton_A_01672_BGI-A2_v1.0 320 SVSVPASFAKETSLAEEP--STVIKDSEGRKWEINILVDAKS-NVRLGAGWSQFVQENKLEAGDTISFQHIPNTGNVIYFKII 399
                                 4799********888654..47779***********877777.579************************9888887888887 PP

                                 -S CS
                          B3  98 rk 99 
                                 +k
  Cotton_A_01672_BGI-A2_v1.0 400 SK 401
                                 75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-2411109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2412111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.88913107IPR003340B3 DNA binding domain
CDDcd100174.26E-2314105No hitNo description
SMARTSM010192.3E-1716107IPR003340B3 DNA binding domain
PfamPF023622.3E-1716102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-15162258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-13163260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.194165260IPR003340B3 DNA binding domain
SMARTSM010195.0E-5168260IPR003340B3 DNA binding domain
PfamPF023627.0E-9182255IPR003340B3 DNA binding domain
CDDcd100171.03E-8182256No hitNo description
Gene3DG3DSA:2.40.330.107.6E-18306390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.93306402IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-16307393IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-14308392No hitNo description
SMARTSM010191.0E-10309402IPR003340B3 DNA binding domain
PfamPF023621.6E-14320401IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MQTLNMTRKP KRNPSFFKIL IGNFDKKLRI PPAFVKHVFK GNVPTMLTLY SDSGNSWRVR  60
IKVEQGSYFF NNGWSKFVKY HDLEIGDFLV FFLVDSSTFD VFIYNRTACA KNIILAAKKR  120
KGRSPGVSRQ IEQTPSHKCT STSKKPRTVP RVQEVEFVSG VTPKNVSYVM VVKGYNKYYA  180
GIPICFTEEA GLGKVSMVMI RGPKGGMWPM MTTFSSKQVL LSVGWSKFLH ENEIVIGDTL  240
LFEHVPNTGH LIHVQVVNKD GTGNTGSLAG KRPRDRPREQ TELPPSTKYA SSSKRTKGVS  300
ELLLEQASFV VVLKKYHQYS VSVPASFAKE TSLAEEPSTV IKDSEGRKWE INILVDAKSN  360
VRLGAGWSQF VQENKLEAGD TISFQHIPNT GNVIYFKIIS KARAANYGDG RNMRKNVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647473.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P5W0I60.0A0A2P5W0I6_GOSBA; Uncharacterized protein
STRINGGorai.003G020700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.17e-19B3 family protein