PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01673_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 202aa    MW: 22366.6 Da    PI: 10.6044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01673_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.9e-13731521497
                                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                                 +  ++p+ f++e g+ k es+  +++d++g  W +k   + ++g++ ++ GW +F + n++ +gD+++F++  +  +f  +++
  Cotton_A_01673_BGI-A2_v1.0  73 NGNYIPRCFVKETGMGK-ESI-TVIKDPRGGMWLMKT--NVSRGQVRFGCGWFQFLHGNEIAAGDTLLFEHLPNtGNF-IHIQ 150
                                 4569*********7775.444.4559***********..*******************************98763444.6666 PP

                                 EE CS
                          B3  96 vf 97 
                                 v+
  Cotton_A_01673_BGI-A2_v1.0 151 VI 152
                                 66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1356149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1461149IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006267155IPR003340B3 DNA binding domain
PfamPF023623.2E-1072150IPR003340B3 DNA binding domain
CDDcd100178.17E-1276149No hitNo description
PROSITE profilePS5086310.57477155IPR003340B3 DNA binding domain
PROSITE patternPS003540176186IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
PfamPF021780.0061178188IPR017956AT hook, DNA-binding motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVVCPHTVKA SPSVNHKWLS MERGQNSLKG QYFPSLRDRV GVFENNTLKT SPGGVNPHSN  60
KRIPPAFVKY ASNGNYIPRC FVKETGMGKE SITVIKDPRG GMWLMKTNVS RGQVRFGCGW  120
FQFLHGNEIA AGDTLLFEHL PNTGNFIHIQ VINKGGNGNC GRLNKQANPC EDTSLAAKRP  180
RGRPRKQIEE PPSTKYAPST AF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185KRPRGRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638207.12e-90PREDICTED: uncharacterized protein LOC108479878
TrEMBLA0A2P5W0G91e-89A0A2P5W0G9_GOSBA; Uncharacterized protein
STRINGGorai.003G020400.14e-46(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620