PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01676_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 212aa    MW: 24026 Da    PI: 4.5996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01676_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-162872147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Cotton_A_01676_BGI-A2_v1.0 28 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTI 72
                                7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.89122IPR017877Myb-like domain
SuperFamilySSF466891.3E-20879IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-11834IPR009057Homeodomain-like
PROSITE profilePS5129425.1272377IPR017930Myb domain
SMARTSM007178.9E-162775IPR001005SANT/Myb domain
PfamPF002495.2E-152872IPR001005SANT/Myb domain
CDDcd001672.04E-123273No hitNo description
Gene3DG3DSA:1.10.10.603.3E-213573IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAEKPGLNRC GKSCRLRWMN YLKPGIKRGN ISPDEEDLII RLHRLLGNRW SLIAGRLPGR  60
TDNEIKNYWN TILSKKLNAD VSKKTSESED MKSIEKYLSA GIITPVVPKA TRCTGIFFSS  120
DEVQHLKNNQ CPPLSTPTDT DDGLTLESSK DNDVPDMDNA LDDFGFSQNG IADVFENSNM  180
LERDELAPMF ETKFNNDLSS LLEFEDDWTN FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1997940110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5896811e-72JX589681.1 Gossypium hirsutum clone NBRI_GE24426 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646061.11e-152PREDICTED: transcription repressor MYB6-like
SwissprotQ388509e-40MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2P5W0H01e-148A0A2P5W0H0_GOSBA; Uncharacterized protein
STRINGGorai.003G021100.11e-139(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2430634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-42myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]