PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01709_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 175aa    MW: 19562 Da    PI: 9.5249
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01709_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY173.61.3e-531514922170
                       YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl..s 102
                                 l vsvP++slfk vtvrCGhC++llsvn+ +++q+++ ++  ++           ++  n+++  +++e+ s+s+ ++++   
  Cotton_A_01709_BGI-A2_v1.0  15 LRVSVPYNSLFKFVTVRCGHCANLLSVNMGTSQQTVPIQDA-QK-----------QQIINIDEDPSNKECGSSSKCNKQFsgF 85 
                                 78********************************9999996.22...........2222233333333333333333333113 PP

                       YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                 ++ ++e+pr+pp irPPekrqrvPsaynr   eeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Cotton_A_01709_BGI-A2_v1.0  86 DSAQNEAPRMPP-IRPPEKRQRVPSAYNR---EEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 149
                                 678899***999.9**************7...**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-5515149IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVSGDIRLGT LISSLRVSVP YNSLFKFVTV RCGHCANLLS VNMGTSQQTV PIQDAQKQQI  60
INIDEDPSNK ECGSSSKCNK QFSGFDSAQN EAPRMPPIRP PEKRQRVPSA YNREEIQRIK  120
ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LEGNKQAKLD QSFADQGAQK SNPYY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5788083e-60JX578808.1 Gossypium hirsutum clone NBRI_GE10906 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669077.11e-115PREDICTED: putative axial regulator YABBY 2
RefseqXP_017608603.11e-115PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB03e-63YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0B0PA211e-116A0A0B0PA21_GOSAR; Putative axial regulator YABBY 2-like protein
STRINGGorai.006G117800.11e-111(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-65YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]