PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01732_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 190aa    MW: 20793.5 Da    PI: 4.9411
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01732_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.9e-43361351100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +l
  Cotton_A_01732_BGI-A2_v1.0  36 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQL 118
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+q+++l+a+la++k++
  Cotton_A_01732_BGI-A2_v1.0 119 QKQINELQAQLAKAKAQ 135
                                 *************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.96435136IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4336133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEYSESTPTT TTATTSSNSP SSSSPPPPPP PVVISPCAAC KILRRRCADK CVLAPYFPPT  60
DPAKFTIAHR VFGASNIIKF LQELPESQRA DAVSSMVYEA SARIRDPVYG CAGAICQLQK  120
QINELQAQLA KAKAQAEIAN MQLQQANLAA FLCMEMAEST SAQPNSHQFV DNPSFMEDNN  180
FESYWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41281353110LOB family transfactor Ramosa2.1
5ly0_B4e-41281353110LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6169071e-128JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610200.11e-139PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-74LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1U8I0Q11e-103A0A1U8I0Q1_GOSHI; LOB domain-containing protein 1-like
STRINGGorai.006G120900.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-62LOB domain-containing protein 1