PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01797_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 695aa    MW: 76034.1 Da    PI: 6.4644
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01797_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07230250526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C +far G+Ck G +C+F Hg
  Cotton_A_01797_BGI-A2_v1.0 230 PCLYFAR-GFCKNGTSCRFLHG 250
                                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4227251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5228250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4229251IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5230250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61230252IPR000571Zinc finger, CCCH-type
PROSITE profilePS501029.03358440IPR000504RNA recognition motif domain
SMARTSM003605.8E-5359435IPR000504RNA recognition motif domain
CDDcd124588.91E-38360435No hitNo description
Gene3DG3DSA:3.30.70.3301.8E-7368445IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549289.39E-10370454IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDSYEATRIV FSRIQNLDPE NASKIMGYLL IQDHGEKEMI RLAFGPEAHI HSLILKAKSH  60
LGLSISNPPT PSTPSSPSPF SSRPSPLSIP SSSSRLTKGL EIPNPSSPST TTWPPLNHCP  120
ISPSSTSSLS YASIVNGSSN TANGSGSLSS VPSCVNTCND NELIDDYQFQ DHLSFLNDAK  180
PEDLFSPRLD LAMSTTPSGY ADSLLHRRSF SVPGLCFGAE DVNSGIGWKP CLYFARGFCK  240
NGTSCRFLHG DCADAAALVG SPSKLNELEQ YQELLRSKAL LQQQHQQKLA SASQLMSGAS  300
FQYSKCVNLL LQQQNDSHRS AMAALMIGDE LHKFGRCRAE RNDFSAMGLG AAINPGSRQI  360
YLTFPADSTF KEEDVSNYFR QVTGFTIYGP VQDVRIPYQQ KRMFGFVTFV YPETVKLILA  420
KGNPHFVCDS RVLVKPYKEK GKVQEKKQQQ QSERGEYSAC SSPSGVDSRE PFDLHLGSRM  480
FYNTQEMLLR RKLEEQADLQ QAIELQGRRL MNLQLLDLKN HHHSQFQHGF STASPVPSPT  540
VSRTPNNQAL IFPVDGIDQE FPQENGGCPI SAVSELAAAI NDDKQLEDYK NDNGNSNTKG  600
KANTEESDLP ESLDHILPDN LFASPKKSAS DHFTVFSTAS AEAVEADDKT GTPPTTSCSN  660
GNPSPANASG LNMASLKTYL LQMPRFSSGQ GTIGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485359.10.0PREDICTED: zinc finger CCCH domain-containing protein 53
RefseqXP_016671721.10.0PREDICTED: zinc finger CCCH domain-containing protein 53-like
TrEMBLA0A0D2SWJ00.0A0A0D2SWJ0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I0F50.0A0A1U8I0F5_GOSHI; zinc finger CCCH domain-containing protein 53-like
STRINGGorai.006G126400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM269734