PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01814_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24441.9 Da    PI: 8.6594
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01814_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.34.6e-241664149
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                k+ie k n qvtfskRr+g++KKA+EL++LC++++a+i+fs+ gk++ +
  Cotton_A_01814_BGI-A2_v1.0 16 KKIEKKNNLQVTFSKRRAGLFKKASELCTLCGVDIAIIVFSPAGKVFSF 64
                                68********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.838868IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-33867IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-27989IPR002100Transcription factor, MADS-box
CDDcd002655.51E-36983No hitNo description
PRINTSPR004041.5E-191030IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVQKNAIQGR QKITMKKIEK KNNLQVTFSK RRAGLFKKAS ELCTLCGVDI AIIVFSPAGK  60
VFSFGHPNVE SAVHRFLTRN TSSVHFDIVE AHPNANIREL NAQITHLLEM LEGEKSKGQA  120
LDEEREAGRR QCWWQAPIHE LGLSELQQLR NATEELKRSV GKQANLMQAA VECSNDWPFL  180
KPNGVGISNF GTQENEMNAS SSITQMHKFG PDLYFDF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609585.11e-163PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU48e-51AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1U8HVP01e-155A0A1U8HVP0_GOSHI; agamous-like MADS-box protein AGL61
STRINGGorai.006G127800.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-53AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]