PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01827_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 321aa    MW: 35693 Da    PI: 5.9191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01827_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-142168148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEd++lv +    G g+W+ +ar  g+ R++k+c++rw +yl
  Cotton_A_01827_BGI-A2_v1.0 21 KGLWSPEEDDKLVTYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 68
                                678*******************************************97 PP
2Myb_DNA-binding47.83.3e-1574117146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+++++E+el++ ++  lG++ W+ Ia++++ gRt++++k++w++
  Cotton_A_01827_BGI-A2_v1.0  74 RGAFSPQEQELIAYLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                                 89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8341668IPR017930Myb domain
SuperFamilySSF466893.16E-2719115IPR009057Homeodomain-like
SMARTSM007172.5E-112070IPR001005SANT/Myb domain
PfamPF002492.8E-132168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-222274IPR009057Homeodomain-like
CDDcd001674.34E-92468No hitNo description
PROSITE profilePS5129422.75869123IPR017930Myb domain
SMARTSM007172.3E-1473121IPR001005SANT/Myb domain
PfamPF002492.0E-1374117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2475124IPR009057Homeodomain-like
CDDcd001676.45E-1076116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMRQPPSMKG DISNGTNKHK KGLWSPEEDD KLVTYMLTNG QGCWSDVARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EQELIAYLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKHSSSTA SHNASDSSLE PNKDAMAARL MTMLEHEVPP MYLDLSSAWS NSFLQSMVLN  180
HSGNSLLMLQ HGKNVVGPVG YFDPTGSCVT QAEVNGDSSL GESEIFGSVD NGIERELYVP  240
PLESIGKNLK IENSVDGNIN NGSNIINTSG VRSNKNNNMS INIDSDDVGS FWIGEELKVG  300
EWDMENLMKD VSSFPFLDFQ S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26211237108B-MYB
1h8a_C7e-262112327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5897875e-82JX589787.1 Gossypium hirsutum clone NBRI_GE24554 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610331.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1U8HT540.0A0A1U8HT54_GOSHI; transcription factor MYB46-like
STRINGGorai.006G129100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-68myb domain protein 46