PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01862_BGI-A2_v1.0
Common NameF383_33367
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 477aa    MW: 52793.3 Da    PI: 6.5029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01862_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.8e-07263284223
                                 EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                  C++Cgk F+r  nL+ H+r H
  Cotton_A_01862_BGI-A2_v1.0 263 FCTICGKGFKRDANLRMHMRGH 284
                                 6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-5261286No hitNo description
PROSITE profilePS5015712.03262289IPR007087Zinc finger, C2H2
SMARTSM003550.0026262284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-6263313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
SMARTSM0035553311344IPR015880Zinc finger, C2H2-like
SMARTSM0035526349371IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDLKERVCDE LQKEVPKGAS STNFNTQHQQ KWEDPSSTLD YSTRIEPPFQ AFNQTSQTQS  60
LLLCNNQIKV PMQDGSINDL LQASKIQDWD PSAMLNNLSF LEQKIHQLQD LVYLIIARKG  120
QVLGRPDELL VQQQQLVTAD LTSIIIQLIS TAGSLLSSVK QTLSAATTSL GQCGEFGGVV  180
FPSSAQRLND GVQPQNAGGS KVSEPPNSID ITSNNGNEQN NHIVEEHELK DEEDAEEGEN  240
LLPGTYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT PGALAKPTKE  300
SSSEPTIIKR YSCPYAGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYI CSRCNTKKFS  360
VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHITLFQG HTPAIPSDEI KVAPAGTSDG  420
ATNKVGSVNF NLSSYVSSES EVQSSSMDIK GGIDDAVGYF SPLSFDTCNF GGFHEFP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611589.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0B0N5A10.0A0A0B0N5A1_GOSAR; Sensitive to proton rhizotoxicity 1-like protein
STRINGGorai.006G131700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-180C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]