PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01867_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 188aa MW: 21934.2 Da PI: 7.0089

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01867_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.3	8.2e-13	5	54	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ r ++fsk i KK +ELS+LC+ e++ iifs++gk y ++ Cotton_A_01867_BGI-A2_v1.0 5 KIIENEDDRLISFSKLCFEICKKIFELSTLCGSEILFIIFSPKGKPYSFA 54 579******************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-12	1	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-17	1	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.236	1	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-16	7	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-5	19	34	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-5	34	55	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
KIEIKIIENE DDRLISFSKL CFEICKKIFE LSTLCGSEIL FIIFSPKGKP YSFAHHSIES 60 FTKRFLNPNQ PLHETIDAPV EAYYKVRIKL LVQDYNEVHD QLDASKEKQK AFSLVQQSCE 120 SKSHHWWKTP IDQLNLRELH ERDKHFAEFI NLISVTRDKK IASISSMHAA MDEDVPFVVP 180 PRYGLSLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483076.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A2P5YSG8	1e-111	A0A2P5YSG8_GOSBA; Uncharacterized protein
STRING	Gorai.006G132000.1	1e-109	(Gossypium raimondii)
STRING	Gorai.006G132100.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	9e-21	AGAMOUS-like 57