PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01943_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 234aa MW: 26988.7 Da PI: 9.3755

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01943_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.9	2.5e-46	12	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF+Pt+eelv +yLk k+ + +l++ ++i++++i++++PwdLp + +e yfFs ++ ky+ g+r nrat+sgyW Cotton_A_01943_BGI-A2_v1.0 12 LPPGFRFQPTEEELVFQYLKCKAFSFPLPA-SIIPDLNICNFDPWDLPGDL---GEERYFFSVKEAKYKIGNRINRATASGYW 90 79**************************.89***********543...5799********************* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+++s+++++ g++ktLvf+ g+ p+g +tdW+mheyrl Cotton_A_01943_BGI-A2_v1.0 91 KATGSDKQIISRRNQVAGMRKTLVFHMGKPPHGLRTDWIMHEYRL 135 *****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-52	8	170	IPR003441	NAC domain
PROSITE profile	PS51005	50.528	12	170	IPR003441	NAC domain
Pfam	PF02365	9.3E-24	13	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MNSLRLNGLR KLPPGFRFQP TEEELVFQYL KCKAFSFPLP ASIIPDLNIC NFDPWDLPGD 60 LGEERYFFSV KEAKYKIGNR INRATASGYW KATGSDKQII SRRNQVAGMR KTLVFHMGKP 120 PHGLRTDWIM HEYRLVNVPN NDFNSANNPM MQNYLNHGME KWVLCHVFLK RTSKKSSEEE 180 IMQSFCNKNR NEELGHRMEP KLYNFMREKD AESSSSSSAS SRSDITEVSS SACS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	12	175	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	12	175	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	12	175	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	12	175	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	7e-43	12	175	20	173	NAC domain-containing protein 19
3swm_B	7e-43	12	175	20	173	NAC domain-containing protein 19
3swm_C	7e-43	12	175	20	173	NAC domain-containing protein 19
3swm_D	7e-43	12	175	20	173	NAC domain-containing protein 19
3swp_A	7e-43	12	175	20	173	NAC domain-containing protein 19
3swp_B	7e-43	12	175	20	173	NAC domain-containing protein 19
3swp_C	7e-43	12	175	20	173	NAC domain-containing protein 19
3swp_D	7e-43	12	175	20	173	NAC domain-containing protein 19
4dul_A	6e-43	12	175	17	170	NAC domain-containing protein 19
4dul_B	6e-43	12	175	17	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636638.1	1e-177	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-67	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1U8L6E2	1e-174	A0A1U8L6E2_GOSHI; NAC domain-containing protein 83-like
STRING	Gorai.007G043900.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22074	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-69	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]