PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02021_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 206aa    MW: 23988.2 Da    PI: 9.2541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02021_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.8e-2048103257
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                  k++++++ q++ Le +F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Cotton_A_02021_BGI-A2_v1.0  48 TKKRKLSQAQVDLLEHHFGNEHKLESERKDRLASELGLDARQVAVWFQNRRARWKN 103
                                 67889*************************************************95 PP
2HD-ZIP_I/II112.72.3e-3649139292
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 kkr+ls+ qv lLE++F +e+kLe+erK +la+eLgl++rqvavWFqnrRAR+k+k+lE+++++Lk+ +d+++ e+ rLe+ev
  Cotton_A_02021_BGI-A2_v1.0  49 KKRKLSQAQVDLLEHHFGNEHKLESERKDRLASELGLDARQVAVWFQNRRARWKNKKLEEEFSKLKSDHDEVVLEKFRLESEV 131
                                 9********************************************************************************** PP

                 HD-ZIP_I/II  85 eeLreelk 92 
                                 ++L+e+l 
  Cotton_A_02021_BGI-A2_v1.0 132 TKLTEKLC 139
                                 ****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.13544104IPR001356Homeobox domain
SuperFamilySSF466895.13E-1845113IPR009057Homeodomain-like
SMARTSM003891.2E-1846108IPR001356Homeobox domain
CDDcd000862.21E-1547105No hitNo description
PfamPF000464.7E-1748103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-2051111IPR009057Homeodomain-like
PRINTSPR000311.6E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.6E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNKLEDQMAL ISQIYLGGYP QVAPQQAESK PRRRRKKNKG GENNLSKTKK RKLSQAQVDL  60
LEHHFGNEHK LESERKDRLA SELGLDARQV AVWFQNRRAR WKNKKLEEEF SKLKSDHDEV  120
VLEKFRLESE VTKLTEKLCE AKKEIQRLGE RVDRGSSNSP SSSLTMEAMV TPFLGEFGLE  180
GYDNVFYIAE DSYNNIPGME WMNMYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13250RRRKKNKGGENNLSKTKKR
23451RKKNKGGENNLSKTKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636936.11e-152PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232083e-65ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2P5X5Y71e-147A0A2P5X5Y7_GOSBA; Uncharacterized protein
STRINGGorai.007G051100.11e-134(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-51homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]