PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02053_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 119aa    MW: 14125.6 Da    PI: 11.4162
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02053_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-13489184
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                                f+k lt+ d  k  rl +p k +e++ g + +++  l+++d+s r W++++++rk+s    v+++GW +F +  +L+ gD ++++
  Cotton_A_02053_BGI-A2_v1.0  4 FIKRLTKTDIEK--RLAIPTKSLEHFpGFNGRQGAYLKVKDRSHRLWRFRCSVRKTSYPkPVFSSGWLQFTHHYNLRIGDKITLR 86
                                677776666555..59*******777*666668999***************8877776579**********************99 PP

                                ..E CS
                          B3 84 ..l 84
                                  l
  Cotton_A_02053_BGI-A2_v1.0 87 kqL 89
                                333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-17391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-13386IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00694107IPR003340B3 DNA binding domain
PfamPF023629.3E-10489IPR003340B3 DNA binding domain
CDDcd100171.56E-15486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAVFIKRLTK TDIEKRLAIP TKSLEHFPGF NGRQGAYLKV KDRSHRLWRF RCSVRKTSYP  60
KPVFSSGWLQ FTHHYNLRIG DKITLRKQLK RDVSNGVQYK IEVQRKINLF GKDVWAHVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286448.12e-49AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A2P5WA742e-78A0A2P5WA74_GOSBA; Uncharacterized protein
STRINGGorai.008G044600.13e-78(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-10RAV family protein