PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02091_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 437aa    MW: 48542.9 Da    PI: 5.9214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02091_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.4e-25235290159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+    r+ ed +++++tYeg+Hnh+
  Cotton_A_02091_BGI-A2_v1.0 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVQ----RCLEDMSILITTYEGTHNHP 290
                                 58***************************99**965....5777899************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-26220292IPR003657WRKY domain
SuperFamilySSF1182905.1E-23228292IPR003657WRKY domain
PROSITE profilePS5081123.743230292IPR003657WRKY domain
SMARTSM007743.2E-30235291IPR003657WRKY domain
PfamPF031062.3E-21236290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEMDLSLKID SKEKEEDMEE SMDSKMQVEE AEATHEDKEV TSMAAAGEVE DVDAPLELSL  60
QGNNKTHELS VLQLEMNRMK EENKVLRKVV EKTMQDYYDL QMKFAVIQKN DHKQDPPIFL  120
SLNGNGNGNS SQDQQPIQRN LNIGNHQKHG SSEGDHNDEE NEEELGLSLR LQISSSQRER  180
EEEHNKEGSE ETPNVASEQN KLQPTSLSAI TSHAVSPPSR KARVSVRARC QTATMNDGCQ  240
WRKYGQKIAK GNPCPRAYYR CTVAPGCPVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS  300
TASAAADSFM FLDSSNPLSN GIPNLSQASL PYQNHPHLMK SHRNVMNFTD PSKGTILDLT  360
NNRHVNHHFP TASSSSSHHP SPVFPWMPSR LSNGTSSRQW KSQEDKSLAE NVTAIASDPK  420
FRVAVAAAIT SLINKES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18222294176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698300.0KF669830.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636682.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F04e-76WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A068LIA80.0A0A068LIA8_GOSHI; WRKY transcription factor 81
TrEMBLA0A2P5YDF30.0A0A2P5YDF3_GOSBA; Uncharacterized protein
STRINGGorai.008G041400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-54WRKY DNA-binding protein 9