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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cotton_A_02187_BGI-A2_v1.0 | ||||||||
| Common Name | F383_06884 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | C3H | ||||||||
| Protein Properties | Length: 459aa MW: 50321 Da PI: 8.2286 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 33.6 | 6.4e-11 | 104 | 128 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C +++ t tCk+Gd+CkF H+
Cotton_A_02187_BGI-A2_v1.0 104 GEKDCAHYMLTRTCKFGDSCKFDHP 128
7889********************8 PP
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| 2 | zf-CCCH | 34.9 | 2.5e-11 | 155 | 181 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++f++t Ck+G++CkF+H++
Cotton_A_02187_BGI-A2_v1.0 155 PGEPDCPYFLKTQRCKFGSKCKFNHPK 181
5789*********************96 PP
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| 3 | zf-CCCH | 41.4 | 2.4e-13 | 204 | 228 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f+++tGtCk+G++CkF+H++
Cotton_A_02187_BGI-A2_v1.0 204 EPPCAFYMKTGTCKFGSTCKFNHPK 228
79*********************96 PP
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| 4 | zf-CCCH | 38.8 | 1.6e-12 | 274 | 298 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C+f+++tG CkyG++C+++H+
Cotton_A_02187_BGI-A2_v1.0 274 DEVDCPFYLKTGSCKYGSTCRYNHP 298
6789********************9 PP
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| 5 | zf-CCCH | 42.8 | 8.6e-14 | 365 | 389 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++ +C+++++tG+Ck+GdrCkF+H+
Cotton_A_02187_BGI-A2_v1.0 365 GQTECDYYMKTGECKFGDRCKFHHP 389
6789********************8 PP
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| 6 | zf-CCCH | 39.5 | 9.2e-13 | 419 | 440 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C+++++tGtCkyG++CkF H+p
Cotton_A_02187_BGI-A2_v1.0 419 CPYYMKTGTCKYGATCKFDHPP 440
********************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00356 | 0.0011 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.507 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-5 | 103 | 129 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-8 | 104 | 128 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 108 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.3E-6 | 154 | 181 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.507 | 154 | 182 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.0E-9 | 156 | 181 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.46E-6 | 159 | 185 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 160 | 182 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-6 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.126 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.4E-11 | 204 | 228 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-6 | 205 | 229 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.9E-6 | 206 | 227 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.4E-6 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.704 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.0E-10 | 274 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.65E-5 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 278 | 297 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1E-7 | 363 | 390 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-7 | 363 | 393 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.723 | 363 | 391 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.4E-11 | 365 | 389 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-6 | 369 | 390 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.2E-6 | 413 | 440 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.845 | 413 | 441 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.23E-6 | 416 | 440 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.8E-6 | 419 | 438 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-10 | 419 | 440 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003723 | Molecular Function | RNA binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 459 aa Download sequence Send to blast |
MANQFYGYSS PSPSASTLHR YLDSDAASQS QSHLLQQLHP SAAAAAAAAA SLIKRPSQVL 60 YHQNVLDAQN TLGQIEAWYS ASSLVKRPRL ESASNLPIYP QRPGEKDCAH YMLTRTCKFG 120 DSCKFDHPIW VPEGGIPYWK EVPPVPAGES LPERPGEPDC PYFLKTQRCK FGSKCKFNHP 180 KDKLDAPGDS ENLTVSGLPE RPSEPPCAFY MKTGTCKFGS TCKFNHPKDI QIQLSLQNNV 240 NCEQSDIAMK IGGISGDIKP ALYHNSKGLP VRPDEVDCPF YLKTGSCKYG STCRYNHPDR 300 NAFIPPVALG HSLIASASNL NIGVVNPASS LYQTIDPRLS QTTLLAQQTM PTLVGTQTVY 360 PQRPGQTECD YYMKTGECKF GDRCKFHHPI DRLTTNEASQ QAIKLTLAGL PRREGSVHCP 420 YYMKTGTCKY GATCKFDHPP PGEVMSVTGV QGTSTTMSG |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017619589.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 | ||||
| Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
| TrEMBL | A0A0B0PT79 | 0.0 | A0A0B0PT79_GOSAR; Zinc finger CCCH domain-containing 37-like protein | ||||
| STRING | Gorai.013G146700.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM9761 | 28 | 36 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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