PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02276_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 396aa    MW: 44400.2 Da    PI: 9.1792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02276_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.47.8e-11221071490
                                 T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                          B3  14 grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                                 +rl +p ++++           +g+++e  + +++de+gr+W++ +++rk++++   vl + W +Fv++++L+egD v+++ +
  Cotton_A_02276_BGI-A2_v1.0  22 RRLAVPMEYFNMEqfpkpgaslEGSPRE--DFVVKDEKGRVWNLSCSIRKQPNHpkPVLINEWIHFVQSKKLREGDRVIIYGE 102
                                 5677777776444567777766667666..69****************9999999999999********************87 PP

                                 SSSEE CS
                          B3  86 grsef 90 
                                 +++++
  Cotton_A_02276_BGI-A2_v1.0 103 QDETG 107
                                 77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-109110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.9529117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-1510122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-1210100No hitNo description
PfamPF023621.8E-821109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVILELPMII LEKRLSKTDI SRRLAVPMEY FNMEQFPKPG ASLEGSPRED FVVKDEKGRV  60
WNLSCSIRKQ PNHPKPVLIN EWIHFVQSKK LREGDRVIIY GEQDETGLMQ LRIKAEKCTG  120
SYEAPCFPFM NQNPDRNKGL SSHSSSSEST ATFQPSETED HSAEVLSHEL GQTTATTTPG  180
IYKERIPTTN STSQDIARYK MKRPRLSSSL ELTLKPTTTE YHLADVLKHE LGRTTAARTP  240
SITKEHIPTN RSTSQDIARY KKKGPRLSTS LELTLKPTTA EYLLADVLNH ELNQITATTT  300
PSINKEHIPT NHSTSQDIAR HKTKGPRLNP SLELTLKPAT TEGMTAATSS SIDKNLAPTF  360
HSHSQDIGTY NTETPNLSLN LGLTLKPTYM QDTTHK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5Y8W70.0A0A2P5Y8W7_GOSBA; Uncharacterized protein
STRINGGorai.002G234300.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2208034