PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02375_BGI-A2_v1.0

Common Name

F383_00477

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 25413.2 Da PI: 6.0515

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02375_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.4e-19	36	89	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ft++q++ Le+ Fe++ ++ +++ + A++lgL+ rqV++WFqNrRa+ k Cotton_A_02375_BGI-A2_v1.0 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLK 89 5679************************************************98 PP
2	HD-ZIP_I/II	118.1	4.7e-38	36	127	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e+ Cotton_A_02375_BGI-A2_v1.0 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEK 118 79******************************************************************************* PP HD-ZIP_I/II 85 eeLreelke 93 + L +++++ Cotton_A_02375_BGI-A2_v1.0 119 QCLISQMEK 127 *999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.3E-18	19	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	31	91	IPR001356	Homeobox domain
SMART	SM00389	7.8E-17	34	95	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-16	36	89	IPR001356	Homeobox domain
CDD	cd00086	1.21E-14	37	92	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-18	37	97	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-5	62	71	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	71	87	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-13	91	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP 60 KKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC 120 LISQMEKLSE MLAESETNGV NKVSKVGSTE HEAEPGSSFK QEDDGVLGLE TQKGHREIED 180 AVKHGDEFLG MDEYRDYDDQ FDHLCSRWHH WLNFWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	91	RRARLKSKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584309	1e-130	JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610470.1	1e-161	PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBL	A0A0B0PQ42	1e-160	A0A0B0PQ42_GOSAR; Homeobox-leucine zipper ATHB-7-like protein
STRING	Gorai.007G016800.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17513	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-42	homeobox 7