PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02473_BGI-A2_v1.0
Common NameF383_28828
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 398aa    MW: 43732.9 Da    PI: 6.4281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02473_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-175398147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Cotton_A_02473_BGI-A2_v1.0 53 KGPWSPEEDAILSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 98
                                79******************************.***********985 PP
2Myb_DNA-binding53.45.7e-17105149147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 r+++T eEd  ++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 
  Cotton_A_02473_BGI-A2_v1.0 105 RKPFTDEEDRMIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 149
                                 789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.348103IPR017930Myb domain
SuperFamilySSF466896.47E-3151146IPR009057Homeodomain-like
SMARTSM007172.5E-1552101IPR001005SANT/Myb domain
PfamPF002492.3E-165398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2654106IPR009057Homeodomain-like
CDDcd001671.86E-145597No hitNo description
PROSITE profilePS5129421.731104154IPR017930Myb domain
SMARTSM007171.5E-16104152IPR001005SANT/Myb domain
PfamPF002491.1E-14105149IPR001005SANT/Myb domain
CDDcd001671.45E-12107150No hitNo description
Gene3DG3DSA:1.10.10.605.4E-24107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
METEVEAVDN GNGTTVAEIN VPSPPPLDGG EGGDCGSRDD SAAGGRARKQ RVKGPWSPEE  60
DAILSELVSK FGARNWSLIA RGIAGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIISAH  120
AVHGNKWAVI ARLLPGRTDN AIKNHWNSTL RRRYMDLGRI NTESANMMED GGCLDKTKAS  180
SEETLSCAED SSFRSLEWKD ASSSEKLDNQ SKGKALTGTQ SDHELIEPPT LFRPVARIRA  240
FNVYNNMDAP EFVSPRSRPV PVLGPSIQTS KPDVGTCKLL ERVYTDRLVP LHCGHGCCGT  300
QNGQNKSLLG PEFVEFSEPP SFPNYELAAI ATDISNLAWL KSGLENNSVR AMDDATAGTS  360
HRSQVHMGHF EESQMSDRLR IEERNSKFMG TMTNLLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40521536107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608697.10.0PREDICTED: pre-mRNA-splicing factor CEF1
SwissprotQ425751e-106MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A0B0MUT00.0A0A0B0MUT0_GOSAR; Transcription factor MYB44-like protein
STRINGGorai.006G179700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-108myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]