PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02515_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 295aa MW: 32763.2 Da PI: 7.3271

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02515_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.7	2.4e-08	37	81	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC C +H+ H +vp+ Cotton_A_02515_BGI-A2_v1.0 37 LMCDVCEQVPAAFTCKADAAALCVACDADIHSAnhlarrHYRVPI 81 58****************************955766667777765 PP
2	CCT	65.8	1.2e-22	217	261	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R a++lRY+eKrk+RkFeK++rY+sRKa+AesRpR+KGrFvk+++ Cotton_A_02515_BGI-A2_v1.0 217 RVARVLRYREKRKKRKFEKTVRYASRKAYAESRPRIKGRFVKRTQ 261 89****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.5E-13	34	81	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.324	34	81	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.1E-6	37	81	IPR000315	B-box-type zinc finger
CDD	cd00021	3.52E-8	38	81	No hit	No description
PROSITE profile	PS51017	16.38	217	259	IPR010402	CCT domain
Pfam	PF06203	7.6E-17	217	259	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAAKHCDACK PTATDPDFMC LSYDSSTAIH GCIGRVLMCD VCEQVPAAFT CKADAAALCV 60 ACDADIHSAN HLARRHYRVP IDPFLGPQKE DVVVMGSWSL LPGFNHKLVE TEDLGISEMD 120 PFIDLEYQDG YHVLQHHNLG MESLVPVQIE PATTVPVVNP IHFCQSQSLS HSVSSSSVEL 180 GDGNSLSDIS YPLRGTTTDP SILICNNQVD QVGSMDRVAR VLRYREKRKK RKFEKTVRYA 240 SRKAYAESRP RIKGRFVKRT QIYNRVDHLC NSATSPSSTT TTSHTHYYGI VPSFL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM201976	0.0	KM201976.1 Gossypium hirsutum cultivar Richmondii CONSTANS-like 8 protein gene, complete cds.
GenBank	KM202006	0.0	KM202006.1 Gossypium darwinii CONSTANS-like 8 protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603704.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	5e-60	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A0D3R345	0.0	A0A0D3R345_GOSHE; CONSTANS-like 8 protein
STRING	Gorai.013G246000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24331	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-29	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]