PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02517_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 32348.6 Da    PI: 8.1197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02517_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-101451148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd +l+ +++++G++          ++R++k+c++rw++yl
  Cotton_A_02517_BGI-A2_v1.0 14 KGPWSPEEDAKLKAYIEKHGTR----------LKRCGKSCRLRWLNYL 51
                                79********************..........68************97 PP
2Myb_DNA-binding38.13.6e-1258100246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_02517_BGI-A2_v1.0  58 GGFSEEEDNIICNLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 100
                                 569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.645951IPR017930Myb domain
SuperFamilySSF466892.57E-241198IPR009057Homeodomain-like
SMARTSM007178.3E-81353IPR001005SANT/Myb domain
PfamPF002495.6E-91451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-171558IPR009057Homeodomain-like
CDDcd001676.56E-916102No hitNo description
PROSITE profilePS5129421.11752106IPR017930Myb domain
SMARTSM007178.6E-1156104IPR001005SANT/Myb domain
PfamPF002499.6E-1158100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2359106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KHGTRLKRCG KSCRLRWLNY LRPNIKHGGF  60
SEEEDNIICN LYLSIGSRWS IIAAQLPGRT DNDIKNYWNT KLKKKLLGRH KQSDINTKLS  120
DHSNNNNNQF TQGLTNSAME RLQLHLQLQA LQNPIFSFYN NPALWPNILP LQQKVTIQGA  180
SNGSTPNIVM ESAAAATTPL TGDTLVDSKP VAMGPLVSSF RQGEVVDEFV VVEDGGQMAE  240
VDGFDGLKDN MVWWSNGFDA KVGSSNCWGS ASSVVQFNEM FKDYELGFNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141067108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162910.0JX616291.1 Gossypium hirsutum clone NBRI_GE60834 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461851.10.0PREDICTED: transcription factor MYB3-like
SwissprotQ9FKL22e-88MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0D2VJS10.0A0A0D2VJS1_GOSRA; Uncharacterized protein
STRINGGorai.013G246200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2433234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-82myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]