PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02733_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 460aa    MW: 51056.5 Da    PI: 8.1003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02733_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-1657101147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 r +WT+eE++++++a +++G g W+ I +++g ++++ q++s+ qk+
  Cotton_A_02733_BGI-A2_v1.0  57 REKWTEEEHQRFLEALRLYGRG-WRQIEEHIG-TKSAVQIRSHAQKF 101
                                 789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1551106IPR009057Homeodomain-like
PROSITE profilePS5129420.71652106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-854103IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-1655104IPR006447Myb domain, plants
SMARTSM007173.0E-1256104IPR001005SANT/Myb domain
PfamPF002492.1E-1457100IPR001005SANT/Myb domain
CDDcd001671.86E-1059102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MLCSGVISCH QCDCLTSELL HVLWIIASFG IPCFSCSSEW CVFFLCARKP YTITKQREKW  60
TEEEHQRFLE ALRLYGRGWR QIEEHIGTKS AVQIRSHAQK FFSKVARESN GGFDGSIKPI  120
VIPPPRPKRK PVHPYPRKSV DLVKGKSPSS QPERSPSPNQ FFREQDNKSP TSVLSDAVGS  180
SALEQQKGCS SPTSCTTNLQ SINTSPVEKE TDYATSNLAA EEEKPSLSSV KIFGQSDAEN  240
ILSMNLNTDF KDFVFGEGNA APVIPSTSFK LFGKTVQVKD SPKPSINAEN FESQTSKTSR  300
DDVDAVNKML VQAFPSTHLD TSLSLSTVID NWNAVPSRSN LSTSDAPLPW WAFYKGVPFC  360
YITSFNQTRS DSSVGERMKE KEILNEGSCS GSNTGSVSHV SRRVSDCVYS ESQRPCLEGK  420
MSLQRCTKGF VPYKRCLAER DMTSSVVSEG QETHRARVCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643923.10.0PREDICTED: protein REVEILLE 7-like
TrEMBLA0A0B0P3260.0A0A0B0P326_GOSAR; Protein LHY-like protein
STRINGGorai.001G069700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-43MYB_related family protein