PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02832_BGI-A2_v1.0

Common Name

F383_28796

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 262aa MW: 29471.4 Da PI: 7.6826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02832_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.2e-06	105	124	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Cotton_A_02832_BGI-A2_v1.0 105 FSCHVCFKTFNRYNNLQMHM 124 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.1E-5	97	127	No hit	No description
PROSITE profile	PS50157	10.055	105	132	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.7E-4	105	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.79E-5	171	209	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEPSDVSCDS DIVSSTNYHT DMEPLDLFPG AIHESLDPMP LLSYENPKPC SEEDKEDVTV 60 ALHIGLPDPS NDSNTNSSKE NIANGGGKQY WIPTPEQILI GFTNFSCHVC FKTFNRYNNL 120 QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCAEGCKN NIEHPRAKPL KDFRTLQTHY 180 KRKHGLKPFM CRKCGKFLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK DHIKAFGSGH 240 GPFPPSFDGV EVLEDTASSL HV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580084	1e-114	JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754308.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Refseq	XP_017645159.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-112	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A0B0MYQ3	0.0	A0A0B0MYQ3_GOSAR; Protein TRANSPARENT TESTA 1-like protein
TrEMBL	A0A1U8PVB2	0.0	A0A1U8PVB2_GOSHI; protein TRANSPARENT TESTA 1-like
STRING	Gorai.010G039600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]