PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02851_BGI-A2_v1.0
Common NameF383_14403
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 507aa    MW: 56018.5 Da    PI: 6.3294
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02851_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35241152102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d++++++isws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++
  Cotton_A_02851_BGI-A2_v1.0  24 FLSKTYDVVDDPSTNSVISWSSANNSFVVWKVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANE 97 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F +g+k+ll++i r+k 
  Cotton_A_02851_BGI-A2_v1.0  98 GFLRGQKHLLKTISRRKP 115
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-3419113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDSLHDSISA ANAVATNGNT VPPFLSKTYD VVDDPSTNSV ISWSSANNSF VVWKVPEFSR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKTI SRRKPANVHS  120
NQQPQVHSSA VAACIEVGTF GLEEEVERLK RDKNVLMQEL VRLRQQQQAT DNQLQAVGQR  180
VQVMEQRQQQ MMSFLAKAMQ SPGFLSQLVQ QQNESKRHLT GGNKKRRLPR QDEENLTGEH  240
GTIFPNRQIV KFQPSLNEAA KAMLHQILKM NTSPRLEPSI DNPDAFMIDG IPPSNALDSG  300
SCSSRISGVT LSEVPPASGQ SYLQAESGFP NSCPSTATHL TTENTKLGKI SDTNQHKYKK  360
EAVFPSVPLM QGVVTDNNVG FTNATPTNAT PGGGSERVNA EYVDPVSVIL NGARPIQSDD  420
FSSDHDMDML LDGTPKLPAI SDVFWEQFLT TSPPSGDSDE INSSSPENGA SCEPELLLGK  480
NNGRDRIQHT NHLTEQMGLL TTDSQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-261511320129Heat shock factor protein 1
5d5v_B7e-261511320129Heat shock factor protein 1
5d5v_D7e-261511320129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024460.0KJ702446.1 Gossypium hirsutum heat shock transcription factor (HSF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646481.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_017646482.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_017646483.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_017646484.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_017646485.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_017646486.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotO818211e-159HFA1B_ARATH; Heat stress transcription factor A-1b
SwissprotQ84T611e-159HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0B0N6I10.0A0A0B0N6I1_GOSAR; Heat stress transcription factor A-1
STRINGGorai.003G053300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-134heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  4. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]