PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03013_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 260aa    MW: 30113.9 Da    PI: 6.7028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03013_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.5e-50101371128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyW
  Cotton_A_03013_BGI-A2_v1.0  10 LPPGFRFYPSDEELVCHYLYKKIANEQVLK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYW 91 
                                 79************************9655.78***************88888999*************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katgkd+ vl   ++e+vg++ktLvfy++rap+g kt W+mhe+rl
  Cotton_A_03013_BGI-A2_v1.0  92 KATGKDRMVLYPtTEEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRL 137
                                 *********99868889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-608156IPR003441NAC domain
PROSITE profilePS5100557.13610156IPR003441NAC domain
PfamPF023651.1E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEQVLKG TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRMV LYPTTEEVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLHTP HLPPKEEWVL CRVFHKSKEE NSTKLSSPMM LETSSTHHAH  180
ETAYQHISSL STATPTYQSH AQCLLNLLQY NSHQENNSNE VSSKVDDGYE FLWDMEENSL  240
GHGVASNLED MRFEINNSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48915616165NO APICAL MERISTEM PROTEIN
1ut4_B5e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_A5e-48915616165NO APICAL MERISTEM PROTEIN
1ut7_B5e-48915616165NO APICAL MERISTEM PROTEIN
3swm_A6e-48915619168NAC domain-containing protein 19
3swm_B6e-48915619168NAC domain-containing protein 19
3swm_C6e-48915619168NAC domain-containing protein 19
3swm_D6e-48915619168NAC domain-containing protein 19
3swp_A6e-48915619168NAC domain-containing protein 19
3swp_B6e-48915619168NAC domain-containing protein 19
3swp_C6e-48915619168NAC domain-containing protein 19
3swp_D6e-48915619168NAC domain-containing protein 19
4dul_A5e-48915616165NAC domain-containing protein 19
4dul_B5e-48915616165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472170.0KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648346.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE61e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0B0PUA00.0A0A0B0PUA0_GOSAR; NAC domain-containing 21/22-like protein
TrEMBLA0A1U8L2M40.0A0A1U8L2M4_GOSHI; protein CUP-SHAPED COTYLEDON 3-like
STRINGGorai.007G147300.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-91NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]