PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03163_BGI-A2_v1.0
Common NameF383_27117
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 260aa    MW: 29940.7 Da    PI: 9.3386
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03163_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.41.2e-2374118145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCs+ ++ ++k+CErH+hrg++rsrk++ee
  Cotton_A_03163_BGI-A2_v1.0  74 DPEPGRCRRTDGKKWRCSKLAYTDSKYCERHMHRGKNRSRKHVEE 118
                                 79*****************************************97 PP
2QLQ45.22.9e-161346235
                         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35
                                +FTa+Q+++L +Q+l++Ky++ + P+P++Ll+ i
  Cotton_A_03163_BGI-A2_v1.0 13 PFTATQWEELQNQVLIFKYMVLGIPIPSYLLFTI 46
                                8*****************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.0E-81248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.7881348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-111346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.50774118IPR014977WRC domain
PfamPF088791.9E-1975117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MMMMSGRNSS GFPFTATQWE ELQNQVLIFK YMVLGIPIPS YLLFTIKTSF LEPHQHDKIG  60
WNCGGEMRME RKVDPEPGRC RRTDGKKWRC SKLAYTDSKY CERHMHRGKN RSRKHVEEEE  120
AASTGITMVN PSSTATQSLS LSLSSFETHA STEKPTLCLL GSSSYRLKQV VYHEPCGTRR  180
SFSGSSMEDG TSWQLQSLKQ SKHDQDDDDK RKPKRKIHRF IDEWPPKHRD SWLDYDDYKS  240
SKSSSDSTTK LSISISSTFT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167041e-162JX616704.1 Gossypium hirsutum clone NBRI_GE61556 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618722.10.0PREDICTED: growth-regulating factor 6-like
TrEMBLA0A0B0MX800.0A0A0B0MX80_GOSAR; Putative global transcription activator SNF2L2
STRINGGorai.013G225300.11e-111(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-43growth-regulating factor 5