PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03202_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27750.2 Da    PI: 8.6064
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03202_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.6e-151155347
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                i n+s r+ t+ kR +g++KK +ELS LC+++++ i++s+   l 
  Cotton_A_03202_BGI-A2_v1.0 11 ITNDSARKATYKKRTKGLMKKLSELSSLCGIDACSIMYSPYKSLP 55
                                89*************************************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-17160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-20184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.946149IPR002100Transcription factor, MADS-box
CDDcd002663.37E-27285No hitNo description
PRINTSPR004048.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTGKKVKLAY ITNDSARKAT YKKRTKGLMK KLSELSSLCG IDACSIMYSP YKSLPEVWPS  60
PMGVQQVLSK LETIPDMEKS KNMLNQESFL SQKTTKAAEQ LKKHCKENWE KEMTHVMFNT  120
ICGKGVIHGL KFEALSEINL LLDKKMSDID KRIDVLAKTP INPQGVSSSS SSSLILLPPM  180
MMVTPEAMPR TGMEDIVQAD VNEMDPMQRQ QWIMELMSNN NNNPQAHVGD NGMMFQFGDN  240
INPNNSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRTKGLMKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740176.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U8NMC80.0A0A1U8NMC8_GOSHI; agamous-like MADS-box protein AGL80
STRINGGorai.004G054700.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-47AGAMOUS-like 80