PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03397_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 398aa    MW: 44909.8 Da    PI: 9.1568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03397_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-173581148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g WT+eEd  l  av+++ g++Wk+Ia+ ++ +Rt+ qc +rwqk+l
  Cotton_A_03397_BGI-A2_v1.0 35 KGGWTEEEDNMLTIAVQKFNGKNWKKIAESVP-HRTDVQCLHRWQKVL 81
                                688*****************************.************986 PP
2Myb_DNA-binding56.94.8e-1887133148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+WT+eEd+l+ ++v++ G++ W+ Ia+ ++ gR +kqc++rw ++l
  Cotton_A_03397_BGI-A2_v1.0  87 KGPWTKEEDDLIFELVEKQGKKKWSEIAKFLP-GRIGKQCRERWCNHL 133
                                 79******************************.*************96 PP
3Myb_DNA-binding53.55.4e-17140181245
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                  +WT++E+++l+ a+  +G++ W+ Ia+ ++ gRt++++k++w+
  Cotton_A_03397_BGI-A2_v1.0 140 TAWTEDEELILISAHGAYGNR-WAEIAKLLP-GRTENSIKNHWN 181
                                 68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4243081IPR017930Myb domain
SuperFamilySSF466894.81E-203395IPR009057Homeodomain-like
SMARTSM007171.7E-143483IPR001005SANT/Myb domain
PfamPF002496.1E-153581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-233794IPR009057Homeodomain-like
CDDcd001678.52E-133881No hitNo description
PROSITE profilePS5129430.77582137IPR017930Myb domain
SuperFamilySSF466891.24E-3184180IPR009057Homeodomain-like
SMARTSM007171.2E-1786135IPR001005SANT/Myb domain
PfamPF002492.4E-1787133IPR001005SANT/Myb domain
CDDcd001671.22E-1589133No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2795140IPR009057Homeodomain-like
PROSITE profilePS5129422.046138188IPR017930Myb domain
SMARTSM007171.2E-16138186IPR001005SANT/Myb domain
PfamPF002499.8E-16139182IPR001005SANT/Myb domain
CDDcd001673.63E-12141181No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23141188IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEQIDTDNNT TTIDAVQSTV SVQGRISGPT RRSTKGGWTE EEDNMLTIAV QKFNGKNWKK  60
IAESVPHRTD VQCLHRWQKV LNPDLVKGPW TKEEDDLIFE LVEKQGKKKW SEIAKFLPGR  120
IGKQCRERWC NHLNPDIKKT AWTEDEELIL ISAHGAYGNR WAEIAKLLPG RTENSIKNHW  180
NSSVRKKVDA MAASRINAVD HSPKAECISL DISKPLEQNL DHGRSISFFS MCKDANGIMK  240
PSSLNISIKR YEDLTIENCR VHSCDPLPRN CQMHSCDSRS YYNVTFGNHE RITSQCFLAR  300
MHAGSSSQPL SDSLHAPVSA SCFGSSSNEM TGKFPDTNSY IGLESILRSA AKSFKNTPSI  360
IRKRTTQIRT QADNHNINQL PLSPTKSPKL ENKAHPRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-69351886159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-69351886159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613539.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A2P5XH530.0A0A2P5XH53_GOSBA; Uncharacterized protein
STRINGGorai.008G117400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-87myb domain protein 3r-3