PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03434_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 178aa    MW: 19984.6 Da    PI: 9.2956
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03434_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221211.6e-3739120485
                      DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagss 85 
                                  r pt+ Er +nk+RER+RRa+a ki+aGL+++Gny+lpkraD n+ lkA c+eAGw ve+DGt yrk s+ + + +++ ss
  Cotton_A_03434_BGI-A2_v1.0  39 YRFPTEDERLKNKQRERKRRAVAHKIFAGLKEHGNYNLPKRADSNDLLKAVCEEAGWHVEADGTIYRKKSRTTMAVSMVHSS 120
                                 589****************************************************************999998444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.2E-3440120IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAGEKENKNT STLRGCIKKS KGPWVVHRTT KEGGRVTRYR FPTEDERLKN KQRERKRRAV  60
AHKIFAGLKE HGNYNLPKRA DSNDLLKAVC EEAGWHVEAD GTIYRKKSRT TMAVSMVHSS  120
CQFVEDIGQS RDEDYCICND DGNVAAPTGT LLSLGLGRSH ECHDINLMLS LSISSSFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-1359106391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-1359106391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-1359106391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-1359106391438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6229156e-34JX622915.1 Gossypium hirsutum clone NBRI_GE69860 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613546.11e-132PREDICTED: BES1/BZR1 homolog protein 1-like
TrEMBLA0A1U8PPS31e-130A0A1U8PPS3_GOSHI; uncharacterized protein LOC107960509
STRINGGorai.012G118900.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1959767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-18BES1/BZR1 homolog 1