PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03518_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 157aa MW: 17841.2 Da PI: 10.2012

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03518_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	175.6	3.1e-54	17	149	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened 106 vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + +++++++ ++++ +t+ s+ s+n + Cotton_A_03518_BGI-A2_v1.0 17 VSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV----------QAASYATQDYRTDLGSSSKCNTKFSMRAPSKNAT 89 9*************************99999999884..........3444445555555555555555566655567777 PP YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Cotton_A_03518_BGI-A2_v1.0 90 EERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 149 6655....8***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.6E-60	17	149	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	92	142	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.7E-5	97	143	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MRYKIRPAPP LRLSQGVSVP CSSLFDIVTV RCGHCTNLWS VNMAAAFQSL SWQDVQAASY 60 ATQDYRTDLG SSSKCNTKFS MRAPSKNATE ERVVNRPPEK RQRVPSAYNQ FIKEEIQRIK 120 ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LENQKSN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604642.1	1e-103	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017604702.1	1e-103	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017604753.1	1e-103	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017604802.1	1e-103	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	5e-75	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8M1V2	1e-101	A0A1U8M1V2_GOSHI; axial regulator YABBY 5-like
STRING	Gorai.001G042700.1	1e-100	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-77	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]