PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03533_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 238aa    MW: 28049.4 Da    PI: 6.3196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03533_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-165499148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_03533_BGI-A2_v1.0 54 RGGMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 99
                                67799*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121848IPR017877Myb-like domain
SuperFamilySSF466893.36E-211295IPR009057Homeodomain-like
SMARTSM007170.0141250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-121455IPR009057Homeodomain-like
PROSITE profilePS5129425.60649103IPR017930Myb domain
SMARTSM007171.8E-1653101IPR001005SANT/Myb domain
PfamPF002494.9E-155499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2356102IPR009057Homeodomain-like
CDDcd001673.13E-125799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENRKEKKSQ PKRGLWKPEE DLILKNYVET YGLMRGGKSC RLRWKNYLRP NIKRGGMSKE  60
EEDLIIRMHK LLGNRWSLIA GRLPGRTDNE VKNYWNTHLN KKSLLGRKRK TLDSNNQHND  120
NMEDNHIENQ DSKKPRQSHD SDHHPIFNTT DGFDLDGNKQ EKDDESAAAW MERAVQFFNY  180
EYDLDYEMVG TPLMMHPDYS NFVFDEEPFT SYMDPFVLFE AFGTADYDVG LGIQSFLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21131027107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6238552e-53JX623855.1 Gossypium hirsutum clone NBRI_GE71325 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645982.11e-176PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF75e-56MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A1U8M5I91e-174A0A1U8M5I9_GOSHI; transcription factor MYB82-like
STRINGGorai.001G044000.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-58myb domain protein 82