PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03585_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 236aa    MW: 26081 Da    PI: 8.3016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03585_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029828323
                                ETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                C++C ++Fs+   L  H+++H
  Cotton_A_03585_BGI-A2_v1.0  8 CTICLRRFSNGKALGAHMKSH 28
                                ********************9 PP
2zf-C2H2140.00015150172123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+++F+++  L  H  +H
  Cotton_A_03585_BGI-A2_v1.0 150 YKCGTCNRTFRSHQALGGHRASH 172
                                 9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.8628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162633IPR007087Zinc finger, C2H2
PfamPF139126.4E-7728IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7728No hitNo description
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7145172No hitNo description
PfamPF139122.5E-8149173IPR007087Zinc finger, C2H2
SMARTSM003550.063150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDQNSRLCTI CLRRFSNGKA LGAHMKSHFG RFSSPSSTSS SNPPLASSKH ELSSESTGSA  60
KYPAGKRSKT LRKFSSNMAM TGSPSDSVSS PLSVEDAALC LLMLSRDQRS NNPKLTQGYE  120
ISDDGVGSDN EKDEEDDEFF GAAKVHPKRY KCGTCNRTFR SHQALGGHRA SHKLKSKKIS  180
QEEEEDDDEN GGDTTDHKIH QQRIFECPFC VFQWGQAPGG HKKIHFDYLP PIARLP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158370.0JX615837.1 Gossypium hirsutum clone NBRI_GE60071 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694469.11e-148PREDICTED: zinc finger protein ZAT9-like
RefseqXP_017633817.11e-148PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8K1M81e-146A0A1U8K1M8_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.001G049200.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-19C2H2-like zinc finger protein