PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03586_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 280aa    MW: 31369.7 Da    PI: 6.6219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03586_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05728223
                                EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                +C  C+++Fs+   L  H+r H
  Cotton_A_03586_BGI-A2_v1.0  7 VCRTCDRRFSNGKALGAHMRFH 28
                                6*******************99 PP
2zf-C2H216.13.2e-05153175123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+++F+++  L  Hi +H
  Cotton_A_03586_BGI-A2_v1.0 153 YKCETCNRTFRSHQALGGHIASH 175
                                 9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.71E-5330No hitNo description
SMARTSM003551.3628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162628IPR007087Zinc finger, C2H2
PfamPF139122.6E-4828IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8151226No hitNo description
SMARTSM003550.0069153175IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-6153175IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM003550.059204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154204231IPR007087Zinc finger, C2H2
PfamPF139126.9E-9204226IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDQYPKVCRT CDRRFSNGKA LGAHMRFHFP NFSLPPSSSS SNPPLSSLTS TKHELSTDST  60
ESSENPSGKR SKHLPKFSSD MAMNDSPSDS VSSPFSMEDA ALCLLMLSRN DRTDNPKLTQ  120
GYEISDHGVG FDYEKDEEDG EFFTEAKAHP KCYKCETCNR TFRSHQALGG HIASHNFKNK  180
KIAQEEAENG GDATDHKIHQ QRIFECEFCD RVFQSGQALG GHKKIHFGYS PSVTHNRISI  240
KFKPTVQPFD LNLPPSEQDD DEVSLAQNTV RQPSIYDKAI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633832.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2P5X7C90.0A0A2P5X7C9_GOSBA; Uncharacterized protein
STRINGGorai.001G049300.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-21C2H2-like zinc finger protein