PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03606_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 132aa    MW: 14833.8 Da    PI: 10.8578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03606_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-191262255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +y+GVr+++ +g+++AeIrd   ng  +r++lg++ taeeAa a+++a+ k++g
  Cotton_A_03606_BGI-A2_v1.0 12 HYRGVRQRP-WGKFAAEIRDSARNG--ARVWLGTYETAEEAALAYDRAAYKMRG 62
                                7********.**********32244..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-321171IPR001471AP2/ERF domain
CDDcd000183.68E-291271No hitNo description
SuperFamilySSF541719.15E-241272IPR016177DNA-binding domain
SMARTSM003807.1E-371276IPR001471AP2/ERF domain
PfamPF008475.3E-151262IPR001471AP2/ERF domain
PROSITE profilePS5103223.5651270IPR001471AP2/ERF domain
PRINTSPR003672.2E-111324IPR001471AP2/ERF domain
PRINTSPR003672.2E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MELTQKVVKG RHYRGVRQRP WGKFAAEIRD SARNGARVWL GTYETAEEAA LAYDRAAYKM  60
RGSRALLNFP HRIGDNEPEP VRVKAKRGAT NDSVSSNGSF PKRTRSLEAN KAELTTVFQL  120
GLFQVGEQLL VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-37877170ATERF1
3gcc_A2e-37877170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640721.13e-93PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404792e-56ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A1U8K3V15e-91A0A1U8K3V1_GOSHI; ethylene-responsive transcription factor 2-like
TrEMBLA0A2P5WL045e-91A0A2P5WL04_GOSBA; Uncharacterized protein
TrEMBLA0A2P5WL182e-91A0A2P5WL18_GOSBA; Uncharacterized protein
STRINGGorai.001G051300.11e-78(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-32ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]