PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03693_BGI-A2_v1.0
Common NameF383_00779
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 487aa    MW: 53358.2 Da    PI: 6.753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03693_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-3093150260
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                 +DgynWrKYGqK vkg+ef rsYY+Ct+++C++kk++ers+ d+k+v+++Y g+H+h+k
  Cotton_A_03693_BGI-A2_v1.0  93 QDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCRAKKQLERSH-DGKMVDTVYVGQHDHPK 150
                                 7****************************************.***************85 PP
2WRKY106.41.5e-33265323159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++d k+v++tYeg+H+h+
  Cotton_A_03693_BGI-A2_v1.0 265 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDAKLVITTYEGQHDHD 323
                                 58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.5687151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-2690151IPR003657WRKY domain
SuperFamilySSF1182908.76E-2492151IPR003657WRKY domain
SMARTSM007744.7E-3392150IPR003657WRKY domain
PfamPF031061.1E-2393149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-35251325IPR003657WRKY domain
SuperFamilySSF1182903.66E-29258325IPR003657WRKY domain
PROSITE profilePS5081136.036260325IPR003657WRKY domain
SMARTSM007744.2E-39265324IPR003657WRKY domain
PfamPF031063.2E-26266322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MVPSGECVTD EVGKDKLRSP DTGSHALQHN TDGKIPSSQS DQGGETPLIK SEKDPLSQSE  60
KLGNTSSVIT KQTPSLLPGM EGSSPVACER ASQDGYNWRK YGQKLVKGNE FVRSYYKCTH  120
PNCRAKKQLE RSHDGKMVDT VYVGQHDHPK PLNLPLAVGF AVSVVEEQPD KSLQTVVRDK  180
SLDAQMPHQI EPRSGSQPLS SAVSEDVKGA ASKSNKIQNV ADSDDDHLVS KRRKKENSNA  240
DASPVEKPTN DSRMVIKTFS EVDIVNDGYR WRKYGQKLVK GNPNPRSYYR CSSPGCPVKK  300
HVERASHDAK LVITTYEGQH DHDLPPTRSV THNTTGVNVH SAAHSGESRT KVEESETICL  360
DMVVYSGSVA ENKSSEQLNG ELRTKSDFSG TVCVSLIDAP ISGPASRSNE QQIEKLDPSE  420
ESDAVDCGTI VHSKSNSQNT SSEQLSSKLE MKSEKDTVCI DKMVHITPRS ECTFNEQRMP  480
SAEPVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-3894326175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384740.0KM438474.1 Gossypium aridum WRKY95 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630640.10.0PREDICTED: WRKY transcription factor 1-like
SwissprotQ9SI371e-94WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0B0P8V70.0A0A0B0P8V7_GOSAR; WRKY transcription factor 1-like protein
STRINGGorai.007G167100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.24e-99zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]