PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03700_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SAP

Protein Properties

Length: 89aa MW: 9485.41 Da PI: 4.923

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03700_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	71.2	1.6e-22	4	73	13	82
SAP 13 eegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcst 82 ++++ +g+gg + g+segps +r+ + ne+w Pfle l qvaidasrs+Grlaaa alanvfqvc + Cotton_A_03700_BGI-A2_v1.0 4 SSADGNGNGGARRCGDSEGPSLTRRCTNNEIWQGPFLEDLVLQVAIDASRSSGRLAAAVALANVFQVCLS 73 22233345555667999***************************************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MSSSSADGNG NGGARRCGDS EGPSLTRRCT NNEIWQGPFL EDLVLQVAID ASRSSGRLAA 60 AVALANVFQV CLSSSSYSSF WFDSSKREF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022771668.1	2e-25	transcriptional regulator STERILE APETALA-like
TrEMBL	A0A2P5Y5W3	6e-36	A0A2P5Y5W3_GOSBA; Uncharacterized protein
STRING	Gorai.001G191800.1	9e-20	(Gossypium raimondii)
STRING	evm.model.supercontig_211.21	2e-21	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24056	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	2e-07	SAP family protein