PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03738_BGI-A2_v1.0

Common Name

F383_08932

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1167aa MW: 131520 Da PI: 7.1659

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03738_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.9	4e-09	45	83	19	56
HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 F++ n+yp+++e+e A++lgLt +qV+ WF +R ++k Cotton_A_03738_BGI-A2_v1.0 45 FNEhNKYPTQKEIEGYAASLGLTLKQVQQWFASKRKRDK 83 7877*******************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0046	35	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.7E-9	44	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.15E-8	45	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.645	45	85	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-6	45	83	IPR001356	Homeobox domain
CDD	cd00086	4.78E-8	47	83	No hit	No description
PROSITE profile	PS50827	12.185	390	449	IPR018501	DDT domain
SMART	SM00571	2.0E-8	390	449	IPR018501	DDT domain
Pfam	PF02791	1.0E-9	391	446	IPR018501	DDT domain
Pfam	PF15612	1.6E-9	666	706	IPR028942	WHIM1 domain
Pfam	PF15613	2.2E-12	799	872	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MEGVGGGLWY GPKRPQLLVV VELGTEQSTE PDSWRESAKG KDIFFNEHNK YPTQKEIEGY 60 AASLGLTLKQ VQQWFASKRK RDKGTILPIH SMTSLSASTK RNAAAISVAR KNQKSTSSVG 120 ANGFGKKKKK MLLPQDFLSP QYILSKVFRK DGPPLGVEFD SLPSQAFHCK GSTESYPADE 180 ECQRAAAKKR KVFELASIDH QNNSTESASV KKHGMGKGLM TVWRVVNPEG GDIPTGIDIS 240 NRQIVAPSQT SPVVRRQPPR NKRRQPLVSQ MKQRSLEKKL QEKKRASIKR REVQSNKNDN 300 QRQPRNEKCE LALDGTISNE RLDQLAMLVD DEELELRELQ AGPNPLQCAD HLGTSGLLGC 360 SLCKDLLAKF PPGSVKMKQP FSMQPWDSSP ETVKKLFKVF HFLYTYSVTL DTCSFTLDEF 420 AQAFHDKDSL LLGKIHVALL KLLLSDVEVE LSGAVLPHFS LSCKFLALLH SVENQEFVVE 480 FWKTSLNPLT WTEILRQVLV AAGFGSKQGL LRREALNKEM SLMVRFGLRP GSLKSELFKI 540 LSERGNNGLK VSDLALSLPV TELNLTSTTE ELEELICSTL SSDITLFEKI SPSAYRLRCS 600 SVAKDGNNCH SDTEDSGSVD DDSDDSSDDS DHDSGNYYQR KFKHNNHHKG RNNMLTVHTE 660 IDESHPGEVW LLGLMEGEYS DLSIEEKLNA LVALIDLLSD GSSIRMENPG KAIVEYVPSI 720 PHYGSGAKIK RSSSNRQNFP RPSWVYGGQR NGVQVSHTSS DSRPVDSSAI TKSFEKERCS 780 SSGQDAKQTE VGVYIHPMQS IFLGSDRRYN RYWLFLGPCN AYDPGHRRIY FESSEDGHWE 840 VIDTEEALRA LLAVLDDRGK REALLIESLE KRETSLCQEM SSRHLHDAEI RNTPSYSPEM 900 DAVREDSCSP VSDVDNLSLT VAMNESLTSC CAIVLQAGKK GEEQNRMWRR LQEFDVWIWD 960 YFYLNLNAVK HNKRSYLDSL TRCESCHDLY WRDEKHCRIC HTTFEIDFDL EERYAIHVAT 1020 CREKGDNSTF PKFKVLPSQL QSLKAAVHAI ESFMPKDALV GAWTKSAHRL WVKRLRRTSS 1080 LSELLQVIAD FVAAINENWL NQCHIEQGGC TVIEEIIVFF PTMPQTSSAL ALWLVKLDEF 1140 IASYLKKIHS GTELENGTRS DRRAAKE

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MEGVGGGLWY GPKRPQLLVV VELGTEQSTE PDSWRESAKG KDIFFNEHNK YPTQKEIEGY  60
AASLGLTLKQ VQQWFASKRK RDKGTILPIH SMTSLSASTK RNAAAISVAR KNQKSTSSVG  120
ANGFGKKKKK MLLPQDFLSP QYILSKVFRK DGPPLGVEFD SLPSQAFHCK GSTESYPADE  180
ECQRAAAKKR KVFELASIDH QNNSTESASV KKHGMGKGLM TVWRVVNPEG GDIPTGIDIS  240
NRQIVAPSQT SPVVRRQPPR NKRRQPLVSQ MKQRSLEKKL QEKKRASIKR REVQSNKNDN  300
QRQPRNEKCE LALDGTISNE RLDQLAMLVD DEELELRELQ AGPNPLQCAD HLGTSGLLGC  360
SLCKDLLAKF PPGSVKMKQP FSMQPWDSSP ETVKKLFKVF HFLYTYSVTL DTCSFTLDEF  420
AQAFHDKDSL LLGKIHVALL KLLLSDVEVE LSGAVLPHFS LSCKFLALLH SVENQEFVVE  480
FWKTSLNPLT WTEILRQVLV AAGFGSKQGL LRREALNKEM SLMVRFGLRP GSLKSELFKI  540
LSERGNNGLK VSDLALSLPV TELNLTSTTE ELEELICSTL SSDITLFEKI SPSAYRLRCS  600
SVAKDGNNCH SDTEDSGSVD DDSDDSSDDS DHDSGNYYQR KFKHNNHHKG RNNMLTVHTE  660
IDESHPGEVW LLGLMEGEYS DLSIEEKLNA LVALIDLLSD GSSIRMENPG KAIVEYVPSI  720
PHYGSGAKIK RSSSNRQNFP RPSWVYGGQR NGVQVSHTSS DSRPVDSSAI TKSFEKERCS  780
SSGQDAKQTE VGVYIHPMQS IFLGSDRRYN RYWLFLGPCN AYDPGHRRIY FESSEDGHWE  840
VIDTEEALRA LLAVLDDRGK REALLIESLE KRETSLCQEM SSRHLHDAEI RNTPSYSPEM  900
DAVREDSCSP VSDVDNLSLT VAMNESLTSC CAIVLQAGKK GEEQNRMWRR LQEFDVWIWD  960
YFYLNLNAVK HNKRSYLDSL TRCESCHDLY WRDEKHCRIC HTTFEIDFDL EERYAIHVAT  1020
CREKGDNSTF PKFKVLPSQL QSLKAAVHAI ESFMPKDALV GAWTKSAHRL WVKRLRRTSS  1080
LSELLQVIAD FVAAINENWL NQCHIEQGGC TVIEEIIVFF PTMPQTSSAL ALWLVKLDEF  1140
IASYLKKIHS GTELENGTRS DRRAAKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	130	GKKKKKM
2	182	190	QRAAAKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017630763.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_017630764.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A2P5W988	0.0	A0A2P5W988_GOSBA; Uncharacterized protein
STRING	Gorai.007G162700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator