PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03847_BGI-A2_v1.0

Common Name

F383_05170

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 889aa MW: 97727.9 Da PI: 7.7791

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03847_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	342	441	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+ Cotton_A_03847_BGI-A2_v1.0 342 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDV 423 89************************555566778***********99899999999.************* PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F++ + +++lv+++++ Cotton_A_03847_BGI-A2_v1.0 424 VTFSRLE-PGGKLVMGFRK 441 **665.77777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.7E-31	337	449	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-20	339	441	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.84E-22	340	441	No hit	No description
SMART	SM01019	4.7E-20	342	443	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.194	342	443	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.3E-16	342	441	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.559	569	619	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.7E-12	574	616	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence Send to blast
MTSTSVATSS SRICFNSVCN DLKSERPRKG WRLRTGELAE LCDRCASIYD EGRFCDTFHL 60 NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS 120 SLPERFKECS AKGWSQLTGS GPAPWRQAPG LFNSSTPQPE LHSRVPYEVD LSTGIDRLNV 180 SERLSIPSLE KKKNEDFPER LMNGSLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK 240 EDSSNPPFGL AVPYTSIDEA NGQMGVSGTP LRPNPQPSLA KQFHSNPHNG LDSSGETQMR 300 NGRPRPDGRG RNQLFPRYWP RFTDQDLQQI SADSNCIITP LFEKMLSASD AGRIGRLVLP 360 KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA 420 GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS 480 GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN 540 VVSIEGFEFE EYGDAPVLGK PTIFATDKSG ERIQWAQCED CFKWRRLPSD VLLPSKWTCS 600 SNSWDPERSS CSATQEMTAE ELENLLPHCN PAASKKMKVA KQESENVDAL EGLDTLANLA 660 ILGEGGILPA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC QTVKRRFRTL 720 MLRREKKQSQ KEADATRKKQ QPSLPDKVVD DEPLPCTTSA GNSSPNQKKV VSENLDDDTN 780 RLKSSSSPFK GQIDLNIQPE REEELSPGSD SGGTMRLLQD ASDKYHRQQS ILSSSGNSNI 840 EVTQTQPGSG TELEKINSSI DLRASHRDAD MDHPAIFPIK TFAPTSATG

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence Send to blast

MTSTSVATSS SRICFNSVCN DLKSERPRKG WRLRTGELAE LCDRCASIYD EGRFCDTFHL  60
NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS  120
SLPERFKECS AKGWSQLTGS GPAPWRQAPG LFNSSTPQPE LHSRVPYEVD LSTGIDRLNV  180
SERLSIPSLE KKKNEDFPER LMNGSLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK  240
EDSSNPPFGL AVPYTSIDEA NGQMGVSGTP LRPNPQPSLA KQFHSNPHNG LDSSGETQMR  300
NGRPRPDGRG RNQLFPRYWP RFTDQDLQQI SADSNCIITP LFEKMLSASD AGRIGRLVLP  360
KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA  420
GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS  480
GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN  540
VVSIEGFEFE EYGDAPVLGK PTIFATDKSG ERIQWAQCED CFKWRRLPSD VLLPSKWTCS  600
SNSWDPERSS CSATQEMTAE ELENLLPHCN PAASKKMKVA KQESENVDAL EGLDTLANLA  660
ILGEGGILPA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC QTVKRRFRTL  720
MLRREKKQSQ KEADATRKKQ QPSLPDKVVD DEPLPCTTSA GNSSPNQKKV VSENLDDDTN  780
RLKSSSSPFK GQIDLNIQPE REEELSPGSD SGGTMRLLQD ASDKYHRQQS ILSSSGNSNI  840
EVTQTQPGSG TELEKINSSI DLRASHRDAD MDHPAIFPIK TFAPTSATG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-64	320	445	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614902	3e-48	JX614902.1 Gossypium hirsutum clone NBRI_GE58616 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649824.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A0B0NZ89	0.0	A0A0B0NZ89_GOSAR; Uncharacterized protein
STRING	Gorai.011G022400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6857	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-150	HSI2-like 1