PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03866_BGI-A2_v1.0
Common NameF383_16148
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 461aa    MW: 51663.6 Da    PI: 10.6208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03866_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07841236
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
             Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                 rW t+E++ll  av ++G ++W+++a+++  +R+
  Cotton_A_03866_BGI-A2_v1.0  8 RRWGTWEELLLGGAVLRHGARDWNLVASELR-TRS 41
                                59*****************************.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002499.8E-6841IPR001005SANT/Myb domain
CDDcd001670.00915941No hitNo description
SuperFamilySSF473703.79E-18247361IPR001487Bromodomain
SMARTSM002974.4E-18251359IPR001487Bromodomain
Gene3DG3DSA:1.20.920.109.4E-16253361IPR001487Bromodomain
PfamPF004399.8E-13265343IPR001487Bromodomain
PROSITE profilePS5001410.291270340IPR001487Bromodomain
CDDcd043691.88E-15272350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGTDMITRRW GTWEELLLGG AVLRHGARDW NLVASELRTR SISPFDFTPE IWSLVNVNVC  60
FLMQVCKAKY EDLRQRYSGS TAWFEELRKQ RMEELRRALE KSEDSIGSLK SKLETLKAEK  120
GDDSRVGYDS SQTESALPCV RSEGVEFSSK DTYKDGAEEM DLKPGNSPTS AEREKISTID  180
NLADAFLGGQ LRSIRKRRGK RKRKYCSPKE GSVGESEFLG ASDFASVSWC KETSASNSAQ  240
IARSSGVEDQ SRDSSKDRID EIMGIFSSVA ETDCASVFRR RLDSQKRGRY KKMILRHMDF  300
DTIKSRIGSN SISSVRELFR DMLLVANNAL VFYSKNTREY KSALLLRHIV TTSLRQHFKE  360
YRTKVSIATF APTRPIHKPP AKPRSIRPGN HKPPGNAANN RNPVVGNSNV SKKPTNASSP  420
PLMESLVVTK KGSARPRKGG CGQASKKSES AAKGRKRTRA R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453459GRKRTRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711270.10.0PREDICTED: uncharacterized protein LOC107925179
TrEMBLA0A0B0NB860.0A0A0B0NB86_GOSAR; Bromodomain-containing 8
STRINGGorai.011G024300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-33DNA-binding bromodomain-containing protein