PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03896_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 220aa    MW: 25480.5 Da    PI: 8.4796
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03896_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.11.2e-32241282103
                                 HHHHHHHHHC............TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
                HSF_DNA-bind   2 Flkklyeile............deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 
                                 Fl k+y +le            +++ k+++sw+++g+ fvv+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++   
  Cotton_A_03896_BGI-A2_v1.0  24 FLAKTYALLEegeeeesgeegcSRRRKKIVSWNNEGTGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSRR--- 103
                                 99********6666555555555599**************************************************9998... PP

                                 TTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  73 kskekiweFkhksFkkgkkellekikrkkse 103
                                       weFkh++F++g k++l +i rkkse
  Cotton_A_03896_BGI-A2_v1.0 104 ------WEFKHEKFQRGYKQMLMEITRKKSE 128
                                 ......**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3415120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-3920125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.11E-2620125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-2824125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMSNKMSSNY SSLSSPKAKG PAPFLAKTYA LLEEGEEEES GEEGCSRRRK KIVSWNNEGT  60
GFVVWSPAEF SDLTLPRYFK HNNFSSFIRQ LNTYGFKKTS SRRWEFKHEK FQRGYKQMLM  120
EITRKKSEPS VFPAFLKASS SSDDHQDHHH HQIMNDGSSA VDEESTNVHR QTLIEENQNL  180
RREKVELQTQ IAQFKDLQIK LLDCIAQHTG TSDHKETRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1511253129Heat shock factor protein 1
5d5v_B2e-1511253129Heat shock factor protein 1
5d5v_D2e-1511253129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674140.0KR067414.1 Gossypium hirsutum HSF33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648418.11e-166PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A0D2UN801e-161A0A0D2UN80_GOSRA; Uncharacterized protein
STRINGGorai.011G027400.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-34heat shock factor 4