PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03915_BGI-A2_v1.0

Common Name

F383_11022

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 289aa MW: 31488.3 Da PI: 9.0465

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03915_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Cotton_A_03915_BGI-A2_v1.0 37 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 97 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.1E-34	39	95	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-27	40	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLRNCEKMVA VITSSATNEW PQKLMEKPSQ EQQQVHQQQA LKCPRCDSSN TKFCYYNNYS 60 LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPT VSASTPPSIG GASPTSGGGV 120 VNPNSTTSSH HINPLFYGLT ANDPYHDVIN LPFSRSSTVT GYDLQPQMSG LGLGFSSGDN 180 TDHYPPLLSS YTNIFGSSSS SSTTTTTPTI ASLLASTLNQ HKFINGGVKN TEALPPFQDL 240 QTTAMKDIKV PCQNHLEQIT LPDPSLYWST NIGAWHDPTN IGSSVTSLI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532295	0.0	EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647351.1	0.0	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A0B0N783	0.0	A0A0B0N783_GOSAR; Dof zinc finger DOF1.4-like protein
STRING	Gorai.011G029300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	8e-38	Dof family protein