PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03916_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 153aa MW: 16880.9 Da PI: 7.8287

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03916_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	74.8	1.4e-23	55	102	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqve+C+ad+++ak+yhrrhkvCe+h+ka+vv v+g++qrfCqqCs Cotton_A_03916_BGI-A2_v1.0 55 ACQVENCTADMTDAKRYHRRHKVCEFHAKAAVVRVAGIHQRFCQQCSS 102 5*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.0E-23	51	102	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	16.768	53	130	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-23	54	104	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-19	56	104	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MATSKAEGKR RLKEMGEEEE EEEEDEDNST TGDDDKKKKG KRGSNTVVGG SCLPACQVEN 60 CTADMTDAKR YHRRHKVCEF HAKAAVVRVA GIHQRFCQQC SSIKTGDANA GSMSYQSLMK 120 QKGAVDDVWP DTTSAVGKVH RNIMEKAQII KTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-19	49	103	4	58	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN795132	1e-165	JN795132.1 Gossypium hirsutum SPL3 mRNA, complete cds.
GenBank	KJ622311	1e-165	KJ622311.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648503.1	3e-69	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q38741	1e-30	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A1U8L8X1	5e-67	A0A1U8L8X1_GOSHI; Squamosa promoter-binding-like protein
STRING	Gorai.011G029400.1	8e-45	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35460	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-25	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]