PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03995_BGI-A2_v1.0
Common NameF383_02857
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 309aa    MW: 35718.8 Da    PI: 8.3327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03995_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-053054123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                ++C+  dC+ s++rk++L+rH+  H
  Cotton_A_03995_BGI-A2_v1.0 30 FVCSveDCHASYRRKDHLNRHLLQH 54
                                89*******************9887 PP
2zf-C2H215.16.8e-055984123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                                +kC   +C++ F  + n+krHi+  H
  Cotton_A_03995_BGI-A2_v1.0 59 FKCLieNCNREFAFQGNMKRHIKEfH 84
                                799999*****************988 PP
3zf-C2H217.61e-0599123123
                                 EEET..TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                 y+C+   Cgk+F   s Lk+H  +H
  Cotton_A_03995_BGI-A2_v1.0  99 YVCQevGCGKVFEFASKLKKHEDSH 123
                                 99*******************9888 PP
4zf-C2H217.89.3e-06198222223
                                 EET..TTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                 kC    C  +Fs+ksnL++Hi+  H
  Cotton_A_03995_BGI-A2_v1.0 198 KCDfeGCLHTFSTKSNLRQHIKAvH 222
                                 688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-71956No hitNo description
Gene3DG3DSA:3.30.160.601.9E-102756IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.5563059IPR007087Zinc finger, C2H2
SMARTSM003550.00653054IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803254IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-65785No hitNo description
Gene3DG3DSA:3.30.160.604.8E-55786IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0835984IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6585989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-795123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.02E-596123No hitNo description
PROSITE profilePS5015710.61699123IPR007087Zinc finger, C2H2
SMARTSM003550.01999123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101123IPR007087Zinc finger, C2H2
SMARTSM003550.86138163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
SMARTSM0035518166187IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.41E-8179235No hitNo description
PROSITE profilePS5015711.676197227IPR007087Zinc finger, C2H2
SMARTSM003550.0018197222IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-6198222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4223250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.7228254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDQYQVGRPP EKLHQVSLNH AVWYTFERPF VCSVEDCHAS YRRKDHLNRH LLQHQGKLFK  60
CLIENCNREF AFQGNMKRHI KEFHDEESSD LDAGSQKQYV CQEVGCGKVF EFASKLKKHE  120
DSHGKFLFVY IKLDSVEAFC SEPGCMKYFT DEQCLKAHVQ SSHAYINCQI CGAKQLKKNI  180
KRHLRSHEPG GVESERIKCD FEGCLHTFST KSNLRQHIKA VHEELKPFAC SFFGCGMRFS  240
YKHVRDNHEK SGCHVYTPGN FLETDEQFCS KPRGGRKRTC PTVEMLVRKR VTPPQMDAMM  300
DLGPSPACS
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603197.10.0PREDICTED: transcription factor IIIA isoform X2
RefseqXP_017603198.10.0PREDICTED: transcription factor IIIA isoform X2
SwissprotQ84MZ41e-115TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0B0P0X50.0A0A0B0P0X5_GOSAR; Gtf3a
TrEMBLA0A2P5XHF70.0A0A2P5XHF7_GOSBA; Uncharacterized protein
STRINGGorai.009G288800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-118transcription factor IIIA